Evaluation of Single Nucleotide Polymorphism in MDR ABCC1 Gene in Type 2 Diabetic patients from Khyber Pakhtunkhwa Pakistan

Authors

  • Imtiaz Ahmad
  • Saira Farman
  • Zahida Parveen
  • Asma Ahmed
  • Beenish Khurshid
  • Abdul Nasir
  • Mohammad Assad
  • Nosheen Faiz
  • Hizbullah Khan
  • Akif Khurshid

DOI:

https://doi.org/10.53555/ks.v12i3.3239

Keywords:

ABCC1 transporter, polymorphism, SNP, Diabetes, structural analysis

Abstract

ABCC1 is a multidrug resistance ATP-Binding cassette transporter commonly known as multidrug resistance-associated protein 1 (MRP1). It is a full-length transporter and is located on chromosome number 16p13.1. Physiologically, it exports xenobiotics and toxins out of the cell, thereby providing a shielding mechanism for the cell. During stress conditions, ABCC1 overexpression causes in an efflux of drugs and creating a hurdle in the treatment of various diseases. Several studies have reported the implication of the ABCC1 genetic polymorphism among cancer patients in different populations. However, studies related to ABCC1 polymorphism in diabetic patients are rare reported, especially from Pakistan. The present study was therefore conceived to genetically screen the ABCC1 gene (exon 22 and flanking intron) in diabetic patients (n=100) from Mardan region of Pakistan. The PCR-SSCP analysis followed by DNA sequencing identified variations in 06 subjects followed by sequencing. A total of 10 genetic variations were identified in diabetic subjects. Among these, 9 were novel including 7 non-synonymous, 1 synonymous, and 1 intronic variant. In addition, rs3851716 (A1009G) is identified as a reported variant in dbSNP and the 1000 Genome project. LD analysis revealed a high degree of linkage for region 16111304-16111721 with African populations. Furthermore, the intronic variant 16111592 G/A is reported in association with diabetes in American and African populations. Furthermore, the structural effect of deleterious variants was also analyzed using homology modelling. The variants were identified in TMD2 regions and exhibit drastic differences in interactions with nearby residues when compared to the wild-type protein, which may affect the binding properties of ABCC1. This study for the first time reports genetic variations (SNPs) of the ABCC1 gene and its effect on structural modifications in proteins in diabetic patients from District Mardan, Khyber Pakhtunkhwa, Pakistan.

Author Biographies

Imtiaz Ahmad

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Saira Farman

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Zahida Parveen

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Asma Ahmed

Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Punjab, Pakistan

Beenish Khurshid

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Abdul Nasir

Second affiliated hospital of Zhengzhou University, Zhengzhou Hinan, China

Mohammad Assad

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Nosheen Faiz

Department of Statistics, Abdul Wali Khan University, Mardan Khyber Pakhtunkhwa, Pakistan

Hizbullah Khan

Institute of Biochemistry, University of Baluchistan, Quetta, Pakistan

University of Chinese Academy of Sciences, Beijing, China

Akif Khurshid

Department of Biochemistry, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan

Downloads

Published

2024-03-19

How to Cite

Imtiaz Ahmad, Saira Farman, Zahida Parveen, Asma Ahmed, Beenish Khurshid, Abdul Nasir, … Akif Khurshid. (2024). Evaluation of Single Nucleotide Polymorphism in MDR ABCC1 Gene in Type 2 Diabetic patients from Khyber Pakhtunkhwa Pakistan. Kurdish Studies, 12(3), 267–275. https://doi.org/10.53555/ks.v12i3.3239